Dr. Anjan Debnath, Ph.D., M.A.S.

Associate Adjunct Professor 
Skaggs School of Pharmacy and Pharmaceutical Sciences

Anjan Debnath Photo
Anjan Debnath, Ph.D., M.A.S.

Pronouns: He|Him|His

(858) 822-5265

Human Resources

Mandi Garhartt (formerly Walker)


Nicholas "Nick" Vistro

Fund Management

Heidi Rosenthal

Research Summary

My research interests can be categorized into two broad areas: (1) Development of new antimicrobials for parasitic diseases. Amebiasis, giardiasis Primary Amebic Meningoencephalitis (PAM) and Acanthamoeba keratitis, caused by the protozoan pathogens Entamoeba histolytica, Giardia lamblia, Naegleria fowleri (brain-eating ameba) and Acanthamoeba castellanii continue to be the major causes of morbidity and mortality. Colitis and diarrhea are the most common manifestations of amebiasis and giardiasis and PAM contributes to extensive inflammation and hemorrhage of the brain. Acanthamoeba keratitis is a painful eye infection that can lead to blindness and occurs in healthy individuals wearing contact lenses.

My research on drug discovery uses a two-pronged approach, combining a strategy of repurposing compounds that are already in clinical development along with development of compounds with novel scaffolds and improved activity against the parasites. This approach encompasses both robotic-driven technology and close interaction with multiple academic groups, pharmaceutical company partners and non-profit organizations. This aligns well with the mission of the Center for Discovery and Innovation in Parasitic Diseases (CDIPD), which is to discover and develop drugs for neglected parasitic diseases.

(2) Studies on molecular mechanism of pathogenesis. E. histolytica, N. fowleri and Acanthamoeba are remarkable organisms with phagocytic and proteolytic capabilities, invading colonic mucosa, human brain and eyes. We are using these model systems to identify or validate key virulence factors contributing to colonic, brain, and eye infections. In addition, we are using designed small molecule inhibitors to probe the function of important proteins, such as cysteine protease, heat shock protein 90, thioredoxin reductase, steroidogenic enzymes in Entamoeba, Naegleria and Acanthamoeba biology. These studies are providing important new clues about how a pathogen orchestrates responses to the host environment and the knowledge generated in these studies has the potential for generating new types of therapeutics for the treatment of amebiasis, PAM and Acanthamoeba keratitis.

Academic Achievements

Education: B.Sc. (Hons.) in Zoology, University of Calcutta, India (1995); M.Sc. in Zoology, University of Calcutta, India (1997); Ph.D. in Parasitology, National Institute of Cholera and Enteric Diseases, University of Calcutta, India (2005); Master of Advanced Studies (MAS) in Clinical Research, UC San Diego (2018).

Awards and Honors: Lady Tata Memorial Trust Junior Scholarship, India (1998); UNESCO-American Society for Microbiology Travel and Scholarship Award (2002); Bill & Melinda Gates Foundation Keystone Symposia Scholarship (2012); Finalist for the 2012 Deloitte QB3 Award for Innovation; Honorary Sage Scholar, Sage Bionetworks (2016); KL2 Award (2016); Research Topic Editor ("Drug Development for Parasite-induced Diarrheal Diseases"), Frontiers in Microbiology (2014-2017); Research Topic Editor ("Recent Progresses in Amebiasis"), Frontiers in Cellular and Infection Microbiology (2017-2019); Judge Travel Award for the Annual Biomedical Research Conference for Minority Students (ABRCMS) (2017-2021); National Center of Leadership in Academic Medicine (NCLAM), UC San Diego (2018).

Leadership Experience: Director of Amoebozoa Core at the Center for Discovery and Innovation in Parasitic Diseases at UC San Diego (2015-present); Associate Editor, Frontiers in Microbiology (2017-present); Associate Editor, BMC Infectious Diseases (2018-present); Editorial Board Member, Microorganisms (2022-present).

  • Drugs for Bugs: From High-throughput Technology to New Discovery (WARR 87)
  • Equity in Systems Science (ESS)
  • Problem Based Learning (SOMC 236)
  • Course Chair, P2 Co-Curricular Program (SPPS 211B)
  • Student Research Project (SPPS 210)
  • Individual Research for Undergraduates (BISP 199)
Key Contributions
  • Developed a shotgun genomic DNA microarray for E. histolytica
  • Developed high-throughput screening assays for E. histolytica and Naegleria
  • Discovered a new lead, auranofin, for the treatment of amebiasis and a new lead, Corifungin, for the treatment of Primary Amebic Meningoencephalitis
  • Auranofin entered a Phase II clinical trial for amebiasis and giardiasis
  • Responsible for two successful orphan drug designations by the US FDA - auranofin for the treatment of amebiasis and Corifungin for the treatment of PAM
Potential Collaborative Programs
  • Active laboratory collaborations with biotechnology and pharmaceutical companies
  • Drug susceptibility testing of medically important protozoan parasites
  • Experience in drug repurposing, success in FDA orphan drug designations and discovery of a new lead that entered Phase II clinical trial